Deep sequencing reads for stem-loop sequence MI0000053

Stem-loop ID cel-mir-82
Reads
                      cel-miR-82-5p                         cel-miR-82-3p                          Count     RPM (mean number of reads per million)
....................CCGGUUUUCUCUGUGAUCUACAGA.....................................................  1         0.463
.....................CGGUUUUCUCUGUGAUCUACAGA.....................................................  3         4.03
.....................CGGUUUUCUCUGUGAUCUACAG......................................................  1         1.58
.....................CGGUUUUCUCUGUGAUCUACA.......................................................  1         1.58
...........................................................CUGAGAUCAUCGUGAAAGCCAGU...............  34        52.1
...........................................................CUGAGAUCAUCGUGAAAGCCAG................  11        18.4
...........................................................CUGAGAUCAUCGUGAAAGCCA.................  5         8.18
...........................................................CUGAGAUCAUCGUGAAAGCCAGUU..............  3         9.3
...........................................................CUGAGAUCAUCGUGAAAGCC..................  2         2.96
...........................................................CUGAGAUCAUCGUGAAAGC...................  2         3.47
............................................................UGAGAUCAUCGUGAAAGCCAGU...............  23804     2.67e+04
............................................................UGAGAUCAUCGUGAAAGCCAG................  2626      3.23e+03
............................................................UGAGAUCAUCGUGAAAGCCA.................  1053      1.35e+03
............................................................UGAGAUCAUCGUGAAAGCC..................  464       647
............................................................UGAGAUCAUCGUGAAAGCCAGUU..............  356       430
............................................................UGAGAUCAUCGUGAAAGC...................  149       236
............................................................UGAGAUCAUCGUGAAAG....................  71        111
............................................................UGAGAUCAUCGUGAAAGCCAGUUG.............  1         1.25
.............................................................GAGAUCAUCGUGAAAGCCAGU...............  42        56
.............................................................GAGAUCAUCGUGAAAGCCA.................  5         9.86
.............................................................GAGAUCAUCGUGAAAGCCAGUU..............  3         3.56
.............................................................GAGAUCAUCGUGAAAGCCAG................  2         1.71
.............................................................GAGAUCAUCGUGAAAGCC..................  1         1.25
..............................................................AGAUCAUCGUGAAAGCCAGU...............  3         6.58
...............................................................GAUCAUCGUGAAAGCCAGU...............  10        13.3
...............................................................GAUCAUCGUGAAAGCCAG................  3         3.74
................................................................AUCAUCGUGAAAGCCAGU...............  18        34.7
................................................................AUCAUCGUGAAAGCCAG................  4         5.92
................................................................AUCAUCGUGAAAGCCAGUUG.............  1         1.25
................................................................AUCAUCGUGAAAGCCAGUUGU............  1         1.9
.................................................................UCAUCGUGAAAGCCAGU...............  31        51.5
.................................................................UCAUCGUGAAAGCCAGUU..............  1         1.58
GAAAUAGGUUCUUUUAGCAACCGGUUUUCUCUGUGAUCUACAGAAUGACAGCUAAUCGUCUGAGAUCAUCGUGAAAGCCAGUUGUUUUUAUGAACUC
......(((((....((((((.(((((((.(.(((((((.((((.(((.......)))))))))))))).).))))))).)))))).....))))). (-35.30)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000024 27984whole body GEO : GSM378784 [ de Wit E et al.]
ER0000000203 1501adult GEO : GSM604032 strain: N2 wild-type, age: Day 0 [ de Lencastre A et al.]
ER0000000204 1840adult GEO : GSM604033 strain: N2 wild-type, age: Day 10 [ de Lencastre A et al.]
ER0000000205 3112adult GEO : GSM604034 strain: daf-2(e1379) mutant, age: Day 0 [ de Lencastre A et al.]
ER0000000206 3578adult GEO : GSM604035 strain: daf-2(e1379) mutant, age: Day 10 [ de Lencastre A et al.]
ER0000000212 14782whole body GEO : GSM139137 mixed-stage [ Ruby JG et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
2
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).
3
PMID:21129974 "MicroRNAs both promote and antagonize longevity in C. elegans" de Lencastre A, Pincus Z, Zhou K, Kato M, Lee SS, Slack FJ Curr Biol. 20:2159-2168(2010).