Deep sequencing reads for stem-loop sequence MI0000043

Stem-loop ID

cel-mir-72

Reads

                 cel-miR-72-5p                              cel-miR-72-3p                            Count     RPM (mean number of reads per million)
...............UAGGCAAGAUGUUGGCAUAGCUGA............................................................  4         2.96
...............UAGGCAAGAUGUUGGCAUAGCUG.............................................................  1         1.06
...............UAGGCAAGAUGUUGGCAUAGC...............................................................  1         1.06
................AGGCAAGAUGUUGGCAUAGCUGA............................................................  8787      9.01e+03
................AGGCAAGAUGUUGGCAUAGC...............................................................  5218      6.19e+03
................AGGCAAGAUGUUGGCAUAGCU..............................................................  3719      3.99e+03
................AGGCAAGAUGUUGGCAUAGCUG.............................................................  1831      2.13e+03
................AGGCAAGAUGUUGGCAUAG................................................................  1710      2.19e+03
................AGGCAAGAUGUUGGCAUA.................................................................  97        148
................AGGCAAGAUGUUGGCAUAGCUGAA...........................................................  37        46.3
................AGGCAAGAUGUUGGCAU..................................................................  16        22.9
................AGGCAAGAUGUUGGCAUAGCUGAAU..........................................................  2         2.96
.................GGCAAGAUGUUGGCAUAGCUGA............................................................  167       194
.................GGCAAGAUGUUGGCAUAGC...............................................................  100       128
.................GGCAAGAUGUUGGCAUAGCU..............................................................  85        102
.................GGCAAGAUGUUGGCAUAG................................................................  41        58.6
.................GGCAAGAUGUUGGCAUAGCUG.............................................................  26        36.4
.................GGCAAGAUGUUGGCAUA.................................................................  2         2.12
..................GCAAGAUGUUGGCAUAGC...............................................................  11        17.8
..................GCAAGAUGUUGGCAUAGCUGA............................................................  5         8.7
..................GCAAGAUGUUGGCAUAGCU..............................................................  3         4.86
..................GCAAGAUGUUGGCAUAG................................................................  3         1.39
..................GCAAGAUGUUGGCAUAGCUG.............................................................  1         1.06
...................CAAGAUGUUGGCAUAGCUGA............................................................  6         11
...................CAAGAUGUUGGCAUAGC...............................................................  4         5.6
...................CAAGAUGUUGGCAUAGCU..............................................................  3         4.54
....................AAGAUGUUGGCAUAGCUG.............................................................  5         8.37
....................AAGAUGUUGGCAUAGCUGA............................................................  3         6.58
.....................AGAUGUUGGCAUAGCUGA............................................................  2         2.12
......................GAUGUUGGCAUAGCUGA............................................................  1         3.1
............................................................AGCUUCGCCACAUUCUGCCACG.................  26        39.7
............................................................AGCUUCGCCACAUUCUGCCAC..................  6         10.7
............................................................AGCUUCGCCACAUUCUGC.....................  3         3.7
............................................................AGCUUCGCCACAUUCUGCC....................  2         4.68
............................................................AGCUUCGCCACAUUCUGCCA...................  1         3.1
.............................................................GCUUCGCCACAUUCUGC.....................  1         1.58
...............................................................UUCGCCACAUUCUGCCACG.................  1         1.58
................................................................UCGCCACAUUCUGCCACG.................  2         3.15
AGGUCCCGUCAGAGCUAGGCAAGAUGUUGGCAUAGCUGAAUGAUCGCUAUAACAACUAUCAGCUUCGCCACAUUCUGCCACGCACUGAUGUGAGGACCU
((((((((((((.((..((((..((((.(((..((((((...................))))))..)))))))..))))..)).))))))...)))))) (-43.21)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000024	288	whole body	GEO : GSM378784		[ de Wit E et al.]
ER0000000203	1357	adult	GEO : GSM604032	strain: N2 wild-type, age: Day 0	[ de Lencastre A et al.]
ER0000000204	3410	adult	GEO : GSM604033	strain: N2 wild-type, age: Day 10	[ de Lencastre A et al.]
ER0000000205	2693	adult	GEO : GSM604034	strain: daf-2(e1379) mutant, age: Day 0	[ de Lencastre A et al.]
ER0000000206	5885	adult	GEO : GSM604035	strain: daf-2(e1379) mutant, age: Day 10	[ de Lencastre A et al.]
ER0000000212	10435	whole body	GEO : GSM139137	mixed-stage	[ Ruby JG et al.]

References

1. PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
2. PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).
3. PMID:21129974 "MicroRNAs both promote and antagonize longevity in C. elegans" de Lencastre A, Pincus Z, Zhou K, Kato M, Lee SS, Slack FJ Curr Biol. 20:2159-2168(2010).