Deep sequencing reads for stem-loop sequence MI0000023

Stem-loop ID cel-mir-52
Reads
                  cel-miR-52-5p                           cel-miR-52-3p                                Count     RPM (mean number of reads per million)
...............CCACCCGUACAUAUGUUUCCGUGCU............................................................  170       299
...............CCACCCGUACAUAUGUUUCCGUG..............................................................  29        52.2
...............CCACCCGUACAUAUGUUUCCGU...............................................................  14        21.4
...............CCACCCGUACAUAUGUUUCCGUGC.............................................................  14        21.6
...............CCACCCGUACAUAUGUUUCCGUGCUU...........................................................  11        18.2
...............CCACCCGUACAUAUGUUUCCG................................................................  11        16.9
...............CCACCCGUACAUAUGUUUCC.................................................................  4         7.27
...............CCACCCGUACAUAUGUUU...................................................................  2         2.64
...............CCACCCGUACAUAUGUUUC..................................................................  1         1.9
................CACCCGUACAUAUGUUUCCGUGCU............................................................  45977     3.51e+04
................CACCCGUACAUAUGUUUCCGUGC.............................................................  3149      2.76e+03
................CACCCGUACAUAUGUUUCCGUG..............................................................  2452      3.63e+03
................CACCCGUACAUAUGUUUCCG................................................................  726       1.12e+03
................CACCCGUACAUAUGUUUCCGU...............................................................  688       1.03e+03
................CACCCGUACAUAUGUUUCCGUGCUU...........................................................  582       582
................CACCCGUACAUAUGUUUCC.................................................................  499       850
................CACCCGUACAUAUGUUUC..................................................................  115       192
................CACCCGUACAUAUGUUU...................................................................  68        98.5
................CACCCGUACAUAUGUUUCCGUGCUUG..........................................................  2         2.64
................CACCCGUACAUAUGUUUCCGUGCUUGA.........................................................  1         0.463
.................ACCCGUACAUAUGUUUCCGUGCU............................................................  50        42
.................ACCCGUACAUAUGUUUCC.................................................................  3         8.1
.................ACCCGUACAUAUGUUUCCGUG..............................................................  3         5.05
.................ACCCGUACAUAUGUUUCCGU...............................................................  2         2.12
.................ACCCGUACAUAUGUUUCCGUGCUU...........................................................  2         1.52
.................ACCCGUACAUAUGUUUCCGUGC.............................................................  1         1.9
.................ACCCGUACAUAUGUUUCCG................................................................  1         1.06
..................CCCGUACAUAUGUUUCCGUGCU............................................................  47        46.8
..................CCCGUACAUAUGUUUCCGUG..............................................................  8         15.2
..................CCCGUACAUAUGUUUCCGUGC.............................................................  5         2.91
..................CCCGUACAUAUGUUUCCGU...............................................................  2         0.927
..................CCCGUACAUAUGUUUCCG................................................................  1         1.9
...................CCGUACAUAUGUUUCCGUGCU............................................................  21        23.5
...................CCGUACAUAUGUUUCCGUG..............................................................  1         1.06
...................CCGUACAUAUGUUUCCGUGC.............................................................  1         0.463
....................CGUACAUAUGUUUCCGUGCU............................................................  54        72.8
....................CGUACAUAUGUUUCCGUG..............................................................  9         14.5
....................CGUACAUAUGUUUCCGU...............................................................  1         1.58
....................CGUACAUAUGUUUCCGUGC.............................................................  1         0.463
.....................GUACAUAUGUUUCCGUGCU............................................................  30        46.1
.....................GUACAUAUGUUUCCGUG..............................................................  3         4.73
.....................GUACAUAUGUUUCCGUGC.............................................................  3         4.73
......................UACAUAUGUUUCCGUGCU............................................................  7         9.81
......................UACAUAUGUUUCCGUGC.............................................................  1         1.58
.......................ACAUAUGUUUCCGUGCU............................................................  11        20.2
........................CAUAUGUUUCCGUGCUU...........................................................  1         1.58
........................................................UCACGUUACAAUGAAAGGGUAG......................  1         0.463
.........................................................CACGUUACAAUGAAAGGGUAGC.....................  245       128
.........................................................CACGUUACAAUGAAAGGGUAG......................  21        14.3
.........................................................CACGUUACAAUGAAAGG..........................  2         3.56
..........................................................ACGUUACAAUGAAAGGGUAGC.....................  1         1.58
UCCAACUCUAACAGUCCACCCGUACAUAUGUUUCCGUGCUUGACAGCGAAGCUCAAUCACGUUACAAUGAAAGGGUAGCCGGUUAUUGAAGUUGGGUCUU
((((((((((((.(.(.((((...(((.(((...((((.(((((......).)))).))))..))))))...)))).).).))))..).))))))).... (-25.70)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000024 2207whole body GEO : GSM378784 [ de Wit E et al.]
ER0000000203 2402adult GEO : GSM604032 strain: N2 wild-type, age: Day 0 [ de Lencastre A et al.]
ER0000000204 3927adult GEO : GSM604033 strain: N2 wild-type, age: Day 10 [ de Lencastre A et al.]
ER0000000205 5694adult GEO : GSM604034 strain: daf-2(e1379) mutant, age: Day 0 [ de Lencastre A et al.]
ER0000000206 6706adult GEO : GSM604035 strain: daf-2(e1379) mutant, age: Day 10 [ de Lencastre A et al.]
ER0000000212 43285whole body GEO : GSM139137 mixed-stage [ Ruby JG et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
2
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).
3
PMID:21129974 "MicroRNAs both promote and antagonize longevity in C. elegans" de Lencastre A, Pincus Z, Zhou K, Kato M, Lee SS, Slack FJ Curr Biol. 20:2159-2168(2010).